Biomolecules
1 - Introduction to Biomolecules
Anchoring Phenomenon: A baby is born and seems perfectly healthy, but after a time exhibit strange symptoms that could lead to physical impairment or even death. What is causing the problem? Can the child be saved?
Unit Essential Question: How do cells make the molecules they need and get rid of the molecules they don’t need? What happens if steps in this process aren’t working?
Team building
Helium Sticks
Jigsaw
What is similar/difference about the stories?
Write your questions on Post-It notes and bring to the poster paper at the front of the class
As a class, organize similar questions together - we will investigate these questions throughout this unit.
Activity
Cut out biomolecules (one set per student group), printable version of this activity.
Pre-Assessment
Biomolecules Pre-Assessment (10 min.)
2 - Intro to Fats (A Slippery Biomolecule That Hates Water)
Opening
Finish sorting biomolecules
Lecture
"Leuko" is white (referring to myelin which covers and makes neurons look white) whereas "dystrophy" refers to "abnormal development."
Watch: Amoeba Sisters Biomolecules Video
Poster
Research online about fats and make a poster with your group.
Be sure to cover these four fats:
Saturates Fat
Unsaturated Fats
Trans (hydrogenated fats)
Triglycerides
Be sure to include a picture/drawing of the fat, what kind of shape, length does it have, where do you find this kind of fat?
Closing
Essential Question: What are biomolecules?
Phenomenon: Biomolecules have structures we can use to organize and understand them
3 - Adrenoluekodystrophy (ALD) & Long, Straight Fats (LCSFAs)
About LCSFA & ALD
ALD is the most common peroxisomal inborn error of metabolism, with an incidence estimated between 1:18,000 and 1:50,000. You can read about ALD here.
Long Chain Saturated Fatty Acids (LCSFAs) accumulate in ALD patients
LCSFA are not broken down correctly in ALD patients.
LCSFA are normally broken down in the peroxisome
Introduction to cell components video
Watch summary about ALD & VLCFA video
Read about the details here
LCSFAs are Bad for Nerves
An introduction to the nervous system crash course and myelin.
Answer these questions:
What is ALD?
What are LCSFA?
Why are the build up of LCSFAs bad? What cells types do LCSFA damage?
Where are LCSFA normal broken down?
What is wrong in ALD, why don't LCSFA get broken down in ALD patients?
Closing
Inquiry Cube activity
https://www.myelin.org/ald-adrenoleukodystrophy/
4 - Genetics of ALD (an X-linked Disorders)
Warm up
DNA KWL: What do you know about DNA? What do you want to know about DNA? What do you want to know about how ALD is passed down?
Preassessment (GoFormative)
Introduction
Recessive & Dominant Traits lecture, an intro to chromosomes, widget lecture.
Activity
Watch history of Gregor Mendel
Closing
What did you learn about DNA (this question at end of task set)?
What would a a ALD pedigree look like?
EQ: How is ALD passed parent to child? Why are more boys affected?
Phenomenon (return to anchoring phenomenon): A child is born and seems perfectly healthy, but after a few years starts to exhibit strange symptoms. What is causing the problem? Can the child be saved?
5 - DNA Biomolecule Extraction
EQ: What is DNA? How does its structure determine its function?
Phenomenon: Some individuals are born with genetic disorders while some are not.
6, 7 & 8 - Lorenzo's Oil Movie
Lorenzo's Oil movie
Two and a half class periods (2:16)
Structure Film Notes
This movie is from the early 90s...get current:
Activity 1
Read about a different case: Baby Mathew
Teacher assigns pairs of students to a metabolic disease from the “inborn errors of the metabolism” diagram. There are 15 diseases in the GoFormative and each student pair is given a number 1-15. Students answer the question number for their assigned disease on the GoFormative: Genetic Diseases of the Metabolism
After answering their assigned question, each student pair writes a CER paragraph claiming whether or not their assigned disease could be Matthew’s diagnosis (question #16). Class discusses which of the potential metabolic diseases they think baby Matthew really has.
Activity 2
Intro slideshow to assist with the Muscular Dystrophy activity (60 min.) (Slideshow is also linked in activity, so no need to present it separately)
Students are not required to take notes on these slides because they use the content in the activity.
Cell Biology, "At Your Service"
EQ: How can we harness the power of bacterial metabolism to make food?
Phenomenon: There are bacteria in my yogurt?!
Slideshow for Yogurt & Incubator Engineering
Teacher Notes about Yogurt Engineering
Introduction to fermentation
Video: Yogurt - Good Milk Gone Bad (“Good Eats: Video - $1.99 on YouTube)
Student Roles: Food Scientist, Quality Control/Testing Specialist, Structural Engineers (optional--only if students will be building incubators) - if no incubators are not being built, consider groups of 3 instead of groups of 4
POGIL Activity
EQ: What are the functions of biomolecules and how are they put together and broken apart?
Phenomenon: Biomolecule subunits can be rearranged to change their structure and function.
Biological Molecules POGIL - Pages 1 and 2 only (45 min.)
POGIL Protocol: teacher implementation guide. Student roles for group learning are described on page 13.
GoFormative: Biological Molecules POGIL Part 1
Dehydration synthesis and hydrolysis activity (90 min.)
This activity requires molecular modeling kits.
Option to save time: have each student in a small group make a different molecule and be an expert on that section of questions to share with the group as a whole.
Biomolecules and Intro to Metabolism Quiz (20 min + 10 min self-grade and fill in answers)
Enzymes Make and Break Biomolecules
EQ: How do organisms make and break molecules?
Phenomenon: A moth only eats sugar but the moth is not made of just sugar (and would NOT taste sweet).
Start Enzyme Notes / Presentation up to slide 12 (taking notes using Cornell Notes template)
Optional Introductory Activity: Popbeadase Activity OR Toothpickase Activity (60 minutes)
Back to Enzyme Notes / Presentation Students take notes on slides 12-23 using Cornell Notes template (same as linked above) to have as a reference for their write-up
Formative Assessment on Enzyme Structure/Function on GoFormative
Conduct Enzyme Lab & Desmos Graphing (see teacher guide). Start at slide 20 of enzyme presentation,. Students use Student Enzyme Lab Inquiry Template (90 min.)
Enzyme Lab Board Discussion and students work on lab conclusion (90 min.)
Homework: Amoeba Sisters Enzymes Video and Handout
(can also be assigned in GoFormative)
DNA structure
Students work in groups of 4 to complete DNA structure patterns inquiry with Components of DNA drawing. Split the drawing into 4 sections, so that each student is creating about 3 nucleotides. Each group produces an 8-base chain of nucleotides (sequence: TGTACAAC) and then base-pairs the other nucleotides. Sample final image can be seen here. (90 min)
DNA Replication
Transcription & Translation
Transcription/Translation Activity (60 min.)
Do Gene Expression and Cell Types Article and Questions - Estrogen Receptor Mutation. GoFormative Quick Code for this article and questions: ECNNOR. Using GoFormative for this allows you to display student answers and discuss their claims, reasoning, and evidence.